jksrc / hg18のENCODE regulation trackの設定

bio comp 
src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra

より、かいつまんでみる。

  • top levelは、superTrack (wgEncodeReg)
  • 2nd levelは、container multiWig (wgEncodeRegTxn, wgEncodeRegMarkEnhH3k4me1, ...)
  • 3rd levelにフツーのwig。
track wgEncodeReg
superTrack on show
shortLabel ENCODE Regulation
longLabel ENCODE Integrated Regulation
wgEncode 1
group regulation
priority 1
canPack On

    track wgEncodeRegTxn
    container multiWig
    noInherit on
    type wig 0.00 2716.04
    superTrack wgEncodeReg hide
    shortLabel Transcription
    longLabel ENCODE Transcription Levels Assayed by RNA-seq on 6 Cell Lines
    configurable on
    visibility full
    maxHeightPixels 100:30:11
    showSubtrackColorOnUi on
    aggregate transparentOverlay
    transformFunc LOG
    viewLimits 0:4
    priority 1.1
    dragAndDrop subTracks

        track wgEncodeRegTxnGm12878
        table wgEncodeCaltechRnaSeqRawSignalRep1Gm12878CellLongpolyaBb12x75
        shortLabel Gm12878
        longLabel Transcription of Gm12878 cells from ENCODE
        parent wgEncodeRegTxn
        type wig 0.00 2446.53
        color 255,128,128
...