Genome Res. November 2003; Vol. 13, No. 11
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The Logic of Life Mans Ehrenberg, Erik Aurell, Johan Elf, Rickard Sandberg, and Jesper Tegner Genome Res. 2003;13 2375-2376 http://www.genome.org/cgi/content/full/13/11/2375?etoc Systems Biology Is Taking Off Mans Ehrenberg, Johan Elf, Erik Aurell, Rickard Sandberg, and Jesper Tegner Genome Res. 2003;13 2377-2380 http://www.genome.org/cgi/content/full/13/11/2377?etoc A Biophysical Approach to Transcription Factor Binding Site Discovery Marko Djordjevic, Anirvan M. Sengupta, and Boris I. Shraiman Genome Res. 2003;13 2381-2390 http://www.genome.org/cgi/content/abstract/13/11/2381?etoc Limitations of Quantitative Gene Regulation Models: A Case Study Philip M. Kim and Bruce Tidor Genome Res. 2003;13 2391-2395 http://www.genome.org/cgi/content/abstract/13/11/2391?etoc Importance of Input Perturbations and Stochastic Gene Expression in the Reverse Engineering of Genetic Regulatory Networks: Insights From an Identifiability Analysis of an In Silico Network Daniel E. Zak, Gregory E. Gonye, James S. Schwaber, and Francis J. Doyle, III Genome Res. 2003;13 2396-2405 http://www.genome.org/cgi/content/abstract/13/11/2396?etoc Signal Processing and Flagellar Motor Switching During Phototaxis of Halobacterium salinarum Torsten Nutsch, Wolfgang Marwan, Dieter Oesterhelt, and Ernst Dieter Gilles Genome Res. 2003;13 2406-2412 http://www.genome.org/cgi/content/abstract/13/11/2406?etoc Investigations Into the Analysis and Modeling of the TNF{alpha}-Mediated NF-{kappa}B-Signaling Pathway Kwang-Hyun Cho, Sung-Young Shin, Hyeon-Woo Lee, and Olaf Wolkenhauer Genome Res. 2003;13 2413-2422 http://www.genome.org/cgi/content/abstract/13/11/2413?etoc Reconciling Gene Expression Data With Known Genome-Scale Regulatory Network Structures Markus J. Herrgard, Markus W. Covert, and Bernhard o. Palsson Genome Res. 2003;13 2423-2434 http://www.genome.org/cgi/content/abstract/13/11/2423?etoc Regulatory Network of Escherichia coli: Consistency Between Literature Knowledge and Microarray Profiles Rosa Maria Gutierrez-Rios, David A. Rosenblueth, Jose Antonio Loza, Araceli M. Huerta, Jeremy D. Glasner, Fred R. Blattner, and Julio Collado-Vides Genome Res. 2003;13 2435-2443 http://www.genome.org/cgi/content/abstract/13/11/2435?etoc Functionality of System Components: Conservation of Protein Function in Protein Feature Space Lars Juhl Jensen, David W. Ussery, and Soren Brunak Genome Res. 2003;13 2444-2449 http://www.genome.org/cgi/content/abstract/13/11/2444?etoc Bioinformatics Analysis of Experimentally Determined Protein Complexes in the Yeast Saccharomyces cerevisiae Zoltan Dezso, Zoltan N. Oltvai, and Albert-Laszlo Barabasi Genome Res. 2003;13 2450-2454 http://www.genome.org/cgi/content/abstract/13/11/2450?etoc In Silico Atomic Tracing by Substrate-Product Relationships in Escherichia coli Intermediary Metabolism Masanori Arita Genome Res. 2003;13 2455-2466 http://www.genome.org/cgi/content/abstract/13/11/2455?etoc Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods Carmen G. Moles, Pedro Mendes, and Julio R. Banga Genome Res. 2003;13 2467-2474 http://www.genome.org/cgi/content/abstract/13/11/2467?etoc Fast Evaluation of Fluctuations in Biochemical Networks With the Linear Noise Approximation Johan Elf and Mans Ehrenberg Genome Res. 2003;13 2475-2484 http://www.genome.org/cgi/content/abstract/13/11/2475?etoc Toward Rigorous Comprehension of Biological Complexity: Modeling, Execution, and Visualization of Thymic T-Cell Maturation Sol Efroni, David Harel, and Irun R. Cohen Genome Res. 2003;13 2485-2497 http://www.genome.org/cgi/content/abstract/13/11/2485?etoc Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, and Trey Ideker Genome Res. 2003;13 2498-2504 http://www.genome.org/cgi/content/abstract/13/11/2498?etoc
