convert psl to gff
Bio::FlatFile.open(Bio::Blat::Report,f).each{|r| r.hits.each{|h| puts [ h.target.name , source , feature , h.target.start , h.target.end , "." , h.strand , ".", "Sequence " + h.query.name ].join("\t") } }
Bio::FlatFile.open(Bio::Blat::Report,f).each{|r| r.hits.each{|h| puts [ h.target.name , source , feature , h.target.start , h.target.end , "." , h.strand , ".", "Sequence " + h.query.name ].join("\t") } }